Booth and Brennan investigate a highly classified case regarding the death of a man and a CIA analyst, which revolves around the unknown contents of a briefcase. Funding is cut back at the Jeffersonian, leaving Wendell's (Michael Grant Terry) scholarship at risk, but anonymous donations are made, saving his internship. Booth deals with effects of his coma, causing him to relearn how to fix the broken pipes for his sink, instead of paying for a plumber.